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  • the output of build.mrcc
  • compiler version (for example: ifort -V, gfortran -v)
  • blas/lapack versions
  • as well as gcc and glibc versions

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Segfault with GCC 5.4.0/MKL 2016.4.072

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1 year 2 months ago #502 by jgonthier
Segfault with GCC 5.4.0/MKL 2016.4.072 was created by jgonthier
Dear MRCC community,

I am trying to install MRCC on my local cluster, with the idea of using it both as standalone and through the Psi4 interface.

I am using GCC 5.4.0 and Intel MKL 2016.4.072 that I load through the cluster's module system. I modified the option linpacklib in the build.mrcc.config script for GNU compilers as such:

linpacklib="-lmkl_blas95_ilp64 -lmkl_lapack95_ilp64 -lmkl_intel_ilp64 -lmkl_sequential -lmkl_core -lgomp"

I then build MRCC with:
./build.mrcc GNU -pOMP -f/clusterfs/mhg/jgonthier/mrcc_inst >& buildout

MRCC build and links fine, but a number of tests are failing with SIGSEGV error message, both with OMP_NUM_THREADS=2 and OMP_NUM_THREADS=1. The first to fail is C10H22_STO-3G_LCCSD_mrcc_smallmem.

I re-built MRCC with the debug flag:
./build.mrcc GNU -pOMP -g -f/clusterfs/mhg/jgonthier/mrcc_inst >& buildout

C10H22_STO-3G_LCCSD_mrcc_smallmem still fails. The following error message is printed:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:
#0 0x2B10D3728C57
#1 0x2B10D3727E50
#2 0x2B10D43EA26F
#3 0x482CD8 in symanal_ at mrcc.f:2452
#4 0x483642 in occgraph_ at mrcc.f:2403
#5 0x485011 in gconfig_ at mrcc.f:2222
#6 0x48D6BE in mrcc at mrcc.f:780

Does anyone have a suggestion on how to solve this issue?

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1 year 2 months ago #503 by kallay
Replied by kallay on topic Segfault with GCC 5.4.0/MKL 2016.4.072
We have reproduced the error and we will look at it.
You should use the Intel compiler or the precompiled binaries.
Best regards,
Mihaly Kallay
The following user(s) said Thank You: jgonthier

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1 year 2 months ago #504 by jgonthier
Replied by jgonthier on topic Segfault with GCC 5.4.0/MKL 2016.4.072
I was only today able to compile and test with Intel compilers: everything seems to be fine now. Only the Libxc tests failed, as expected since I do not have it installed.

Thank you very much for your help.

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